Thermus aquaticus and Taq DNA polymerase

Interesting fact: the hotsprings of Yellowstone Park yielded an enzyme that is critical for the DNA-copying polymerase chain reaction (PCR):

“In the hot springs of Yellowstone National Park, [American microbiologist Thomas] Brock (then 40, now 85) had discovered a microbe which he christened Thermus aquaticus, a creature that could survive at temperatures as high as 80°C. At once, our sense of the life-sustaining zone on Earth expanded. “It was Brock who set the ball rolling,” says Michael Danson. “What has happened since is that the temperature has been set higher and higher. The highest temperature record at which growth has been observed is 121°C.”

Thermus aquaticus was also, serendipitously, the organism that established the enormous potential practical importance of these newly discovered life forms. The point about a thermophilic bacterium is that it needs some very tough enzymes, the catalysts of living processes. Our own enzymes break down very quickly at high temperatures, which is another reason that life outside what we consider a normal temperature range was thought impossible. An enzyme in Thermus aquaticus is now known as Taq DNA polymerase and it has become one of the most important enzymes in microbiology. It made possible the polymerase chain-reaction (PCR) technique for amplifying DNA samples. This led to the uses of DNA in forensic science and, in fact, to much of what we now know about DNA. PCR is a molecular photocopier, making it possible to take very small samples of DNA and repeatedly reproduce them. So now murderers have to be obsessively clean if they are to escape the attentions of the forensic scientist.

On a high school field trip, I once got to replicate my own DNA using PCR, at a lab in the University of British Columbia.

Dire Predictions: Understanding Global Warming

While the 4th Assessment Report (4AR) of the Intergovernmental Panel on Climate Change (IPCC) represents the most comprehensive scientific assessment of the causes and consequences of climate change, the report itself is not written in language that is accessible to the average person. Written by climate scientists Michael Mann and Lee Kump, Dire Predictions is an accessible illustrated guide to the conclusions of the IPCC. It also includes some discussion of the practical, political, and ethical implications of the IPCC’s findings.

The 200 page book is a quick and easy read, even for those who are not well acquainted with scientific principles and terminology. It responds directly to many issues raised in the media (such as common climate change denier talking points) and it includes a great many illuminating charts and illustrations. It covers key concepts like what climate models are, and the reasons why we expect the planet to respond to a certain amount of additional carbon dioxide with a certain amount of warming.

The book is broken into five parts, covering climate change basics, projections, impacts, vulnerability and adaptation, and solutions. It very clearly describes which areas are well-understood scientifically and which areas contain substantial remaining uncertainties. Mann and Kump convincingly explain the core mutually-reinforcing lines of evidence that support the ‘big picture’ view of a world that is being dangerously warmed by human emissions, and in which greenhouse gas pollution must be reduced if major damage to humanity and the natural world is to be avoided.

The section on impacts is detailed and wide-ranging, covering everything from different projections of future sea level rise to expected impacts on global agriculture. It covers the trade-offs associated with different mitigation and adaptation strategies, and provides a brief overview of international efforts to address the problem. The section on solutions breaks down where humanity’s greenhouse gas footprint comes from, what options exist for reducing it, and what some of the economics of the situation are. Mann and Kump also do a good job of sketching some of the ethical issues associated with climate change, including the disjoint between the people producing emissions and the people likely to suffer most and the question of what represents a fair effort on the part of countries with different histories and present circumstances.

The book will be elementary to those who already have a through grounding in climate science and policy, though it may be a good way to get a quick and balanced overview of the whole subject. For those who are new to the topic or who feel confused about what the state of the scientific consensus is, this book would be an excellent place to begin.

Climate change and conflict between generations

From what we can tell, the people alive today are putting their own welfare ahead of the integrity of the planet, worsening the prospects of those who will follow. Can anything be done about that?

The problem

The decisions of governments have always affected future generations. When a new bridge is built, it will likely remain in use for a number of decades. Today’s health research (or lack thereof) affects the fates of disease sufferers in the future. The debts accumulated by governments today affect what sort of financial environment the people of the future will live in. The legitimacy of democratic governments is grounded on the claim that they represent the interests of the people who they govern. More precisely, they are meant to implement the current wishes of those people, as identified and put in action through institutions like elections. Ideally, such a system prevents the emergence of parasitic or predatory governments that serve their own interests at the expense of those of the population at large.

Climate change complicates the situation, most importantly by creating a deep conflict between the current generation and all future generations. The choices we are making today – about how much energy we use and where we get that energy from – profoundly affect what kind of world members of future generations will live in and, by extension, what their life prospects will be. The choices we can make that seem most likely to improve their life prospects are generally deeply unpopular, given that they usually involve sacrifices. For instance, we can reduce our impact on the climate by traveling less, enduring colder homes in winter and warmer homes in summer, tolerating the presence of dangerous nuclear power stations, eating less meat, and reducing our consumption of luxury products. By contrast, many of the things which we enjoy doing cause harm to future generations.

Today’s governments necessarily respond to the preferences of the current generation. There is some extent to which those preferences include concern for the future. We generally resist proposals to clearcut national parks, for example. But the revealed pattern of our overall behaviour strongly suggests that we care a lot more about our own immediate physical comfort and convenience than we care about the prospects of the people that follow us. We might delude ourselves into thinking that buying recycled toilet paper and avoiding plastic bags represent sufficient action to protect the planet for future generations, but it seems naïve to think that anybody aside from the most ill-informed members of society seriously believe that.

Today’s governments therefore represent a generation that has chosen to be parasitic and predatory when it comes to the interests of the generations that are to come. We are choosing to impoverish their world, in order to continue to enjoy our present comforts and recreations. Even though we have been amply informed that we are emptying the seas of fish, stripping the planet of biodiversity, and flooding the atmosphere with climate-changing gas, we prefer to carry on as we have in the past. The only threats that seem to motivate large-scale action are immediate threats to the financial system (witness the eagerness with which banks are rescued) and threats to our physical security (the over-reaction to September 11th, huge ongoing investment in weapons, paranoia and mass incarceration in response to crime, etc).

Possible solutions

How are we to escape from this situation? One set of possibilities centres around ways in which the current generation could be brought to sacrifice some of its own welfare for the sake of future generations. One possibility is that the current generation will progressively become willing to accept sacrifices for the sake of the people who will follow – foregoing cheap flights and giant air conditioners for poorly insulated homes. Another possibility is that people will become sufficiently concerned about climate change affecting themselves personally that they will become willing to accept present sacrifices in exchange for a reduction in future risks. Governments could also deviate from the course of implementing the current wishes of voters by enacting policies that reduce the welfare of those alive now for the sake of those yet to come.

There are some alternative possibilities highlighted by those who see such sacrifices as either undesirable or unattainable. It is possible that technological advancement and the operation of markets will somehow make our current preferences compatible with a good world in the future, thus eliminating the conflict between generations. It is also possible that we will undergo a profound shift in what we value, moving away from a preference for resource- and energy-intensive goods and services toward a preference for things that have less of an impact on the planet.

Obviously, there are reasons to be skeptical about all of these possibilities. There are probably other possibilities not listed here. Still, it seems we are in a situation where a clear problem exists and where no clear route forward toward solving it is obvious. Indeed, several of the possible approaches to solution are in conflict with one another. Should we be covering huge areas of desert with solar panels and building hundreds of new nuclear plants to feed the energy ‘needs’ of future generations without altering the atmosphere, or should we be trying to provoke people into re-assessing their needs and living less energy-intensive lifestyles? Perhaps we should be encouraging a rapid reduction in the global population, so that the aggregate impact from a smaller number of richer people will remain within the boundaries of what the planet can tolerate. Perhaps we should be giving up on the project of reducing greenhouse gas pollution, which has been failing now for decades, and accept that our best chance of preventing catastrophic climate change is developing technologies to intentionally cool the planet. Of course, there is no guarantee these technologies will work, and it is virtually certain that they will have serious side-effects.

There are so many overlapping uncertainties that it is challenging to adjudicate between these and other options. We don’t know what the future of fossil fuel production will look like, particularly given that we don’t know what sort of investment decisions will be made. We don’t know how the technology and economics of other forms of energy will evolve during the next couple of decades, in fields as diverse as batteries, nuclear power, and solar panels. We don’t know how quickly and severely the impacts of climate change will be felt, or where in the world they will first occur. We don’t know the political future of important countries like China, or important supra-national entities like the European Union.

One possible response to uncertainty is to identify the things about which we can be most confident and focus our action on them. We now know that burning fossil fuels causes the climate to change dangerously. In response, we could devote our energies to doing whatever we can to avoid the production and use of fossil fuels. We also know that there are many opportunities around the world for improving energy efficiency while simultaneously saving money. That suggests that strategies focused on deploying more efficient technologies and approaches could be promising. We also know that people do care to some extent about the kind of world they are creating for their children and grandchildren, suggesting that further efforts to share what we are learning about the consequences of our current actions and the alternatives that exist for us may prove fruitful.

All of these responses have problems. Restricting fossil fuel use mainly involves choices that are deeply unpopular. People in rich places are accustomed to incredibly energy-intensive lifestyles which only fossil fuels can plausibly sustain in the near-term. Efficiency improvements can be hard to achieve, and tend to be negated when people invest the savings in doing more energy-intensive things, rather than achieving an overall efficiency improvement. Finally, while people do care about the prospects of their children, it is hard to convince them that a stable climate is a key part of that. Even if they can be convinced of that, people are loathe to take action when others around the world are not doing so. Also, our energy choices affect hundreds of future generations. People may care intensely about the prospects of their children and grandchildren, but they tend to behave as though they are indifferent to the prospects of people living in 500 or 1000 years, who by most accounts have an equal claim to our moral consideration.

All told, this is a murky time for the environmental movement. Progress has been blocked on most fronts. International negotiations on climate change have failed to produce meaningful action. The United States, which is arguably the most important country in the world when it comes to developing a global consensus to proceed, is immobilized by domestic politics. Nuclear power stations – one of our larger-scale low-carbon options – are explosively unpopular. Meanwhile, continued growth in rapidly-developing countries and the development of unconventional oil and gas resources keep the world on a trajectory of ever-increasing greenhouse gas pollution. It’s hard not to despair about the future.

Related:

We usually count climate pollution badly

As far as the atmosphere is concerned, it doesn’t matter if an extra molecule of carbon dioxide (CO2) comes from a recently-felled tree, from a molecule of methane in burned natural gas, from oil burned in an airplane, or from a coal-fired power plant. Regardless of the source, it adds to the already-dangerously-large stock of CO2 in the atmosphere.

This is one reason why commenters miss the point when they say things like: “the oilsands were responsible for seven per cent of Canada’s annual greenhouse gas emissions in 2010, while the entire oil and gas sector produced 22 per cent of Canada’s greenhouse gases in the same year”. While these figures may be accurate, they convey the false notion that these are the only sources of CO2 we need to worry about and that reducing these numbers is adequate for solving the climate problem.

What matter is how much fossil fuel we burn in total across history

These figures only take into consideration the emissions that arise from the process of producing oil and gas. For instance, there is the natural gas that gets burned to make bitumen liquid enough to be processed and transported. The figured do not include the emissions that result when these fuels are burned. This is where most of the pollution actually happens and it is inevitable. Even if carbon capture and storage (CCS) was completely free and available today, it wouldn’t be possible to capture the pollution from vehicles, and that is where most of the oil from the oil sands ends up.

The key factor that will determine how much climate change the planet experiences is how much CO2 gets added to the atmosphere. Burning coal, oil, and gas inescapably contributes to that stock, which is already dangerously large. As such, Canada cannot ignore exports when it considers how to bring its economic activity in line with what the planet can withstand. The entire coal, gas, and oil industries need to be phased out in a rapid way. At the same time, we need to develop whichever carbon-neutral energy sources will sustain us in the future: some mixture of renewable forms of energy like wind and solar, biomass, and nuclear power.

Warming begets further warming

It is important to remember that the indifference of the climate to the source of CO2 molecules extends beyond direct human activities. If we warm the planet so much that the Amazon dries out and becomes grassland, the huge volume of CO2 currently stored in the rainforest will be added to the atmosphere. Similarly, if we warm the permafrost to the point where it melts and releases its gargantuan content of methane (a more powerful greenhouse gas than CO2, though shorter-lived), we will have another large dollop of warming to deal with, and an increased chance of catastrophic outcomes like the disintegration of the ice sheets in Greenland and West Antarctica.

Based on the evidence we have from millions of years of climate data, we know that the climate can be prone to violent swings when provoked. Push it a little bit and perhaps it will naturally return to about where it was before (‘pushing’ here means releasing greenhouse gas pollution). Push it enough, however, and it can tip over into a very different state, like a Coke machine tilted to the point where it falls over. All of human civilization has taken place during times of relative climatic stability. If we radically destabilize the climate, the consequences for human beings everywhere will be dire.

Our choice

To a very large degree, Canadians are missing the point about climate change. It isn’t a matter of deciding whether growth in the oil sands is pushing up the Canadian dollar in a way that hurts manufacturers. It also isn’t a matter of deciding what sort of small carbon tax would make Canada’s emissions acceptable. If we are to preserve a habitable planet for the people who will follow us, all signs indicate that we must get serious about the process of phasing out fossil fuels. Either humanity has a future or the global fossil fuel industry does – not both. That is very unwelcome news in a country that stands to make billions of dollars from fossil fuel exports, but it is the situation in which we now find ourselves.

We can choose to ignore the fact that what we are doing threatens the future habitability of the planet. We can also choose to bet that some future technology will allow us to solve or counteract the climate problem. If we make such choices, we should be entirely clear about what we are doing. If we accept the reality of climate change but choose to plow on heedlessly anyway, we should accept that we are entering into a suicide pact with countries like China and the United States that are doing the same thing. Neither has shown itself to be at all capable of moderating its demand for fossil fuels, and Canada is providing an increasing share of the oil, gas, and coal that fuels their frightening emissions.

If we choose to bet on technological salvation, we should similarly recognize that we are placing bets with lives that are not our own. We are saying that whether people in future generations inherit a planet that permits human prosperity or a planet in which civilization struggles to endure depends on whether some magic new technology appears in time to correct our mistakes – mistakes we now fully understand, but which we have so far refused to stop making.

Every barrel of oil we dig up and burn is another dangerous dart we are hurling at random at the people of the future – people who are already going to suffer substantially from the damage we have already done. We don’t need to choose that kind of irresponsible and selfish behaviour. We can turn our energy instead to building a zero-carbon energy system and an efficient society. Such a society will have a shot at long-term prosperity, which is something that cannot be said for societies that depend on fossil fuels that are ever-more scarce and which are destroying the planet.

John Ivison is wrong about climate ethics

Writing recently in the National Post, John Ivison was dismissive of the views of the scientist James Hansen:

So overblown is Mr. Hansen’s rhetoric that it is easily dismissed. This, after all, is the man who, for all his scientific credibility, has said climate change is a moral issue on a par with slavery.

I don’t think the comparison between slavery and unrestrained climate change is unrealistic. Under slavery, the rights and welfare of one group of people (slaves) were ignored so that the wealth and privileges of another group (slave owners) could be protected. When we burn fossil fuels, we are making a similar assertion that our interests count, while those of all the people who will suffer from climate change do not.

What Ivison misunderstands is the instability of the climate system. A human being who has lived for a few decades under a largely stable (though increasingly destabilized) climate regime has no ability to intuitively comprehend how the climate system as a whole responds to forcings. We do, however, have paleoclimatic records that stretch back for hundreds of thousands of years and which reveal that the climate can be a very unstable phenomenon when subjected to such stresses.

Even under a business-as-usual scenario, in which humanity keeps burning a quantity of fossil fuels similar to what we are burning now, it is likely that the climate will warm by more than 4˚C by the end of the century. That would quite likely involve large-scale global impacts, like the progressive disintegration of the Greenland and West Antarctic ice sheets (with accompanying sea level rise) and major changes in precipitation patterns (stressing global agriculture). If we are not to fundamentally and essentially permanently alter the climate that human beings have relied upon since the emergence of our species, we need to aggressively scale back the use of fossil fuels. Far from building new oil pipelines and coal-fired power plants, humanity should be working out the most efficient way to shut down the ones we have.

When we carry on with fossil fuels because they happen to be convenient to us, we are imposing suffering and death on our fellow human beings. By threatening substantial increases in sea level, we are threatening the existence of entire low-lying countries. Hansen isn’t wrong to say that climate change is a moral issue on par with slavery; people like Ivison are wrong to dismiss Hansen’s concerns because they can’t imagine the world changing so much.

Maria van der Hoeven on climate change risks

Maria van der Hoeven, executive director of the International Energy Agency (IEA), has issued a stark warning about the world’s inaction on climate change and the consequences that may have. The Guardian quotes her as saying that the world is “on track for warming of 6°C by the end of the century” and that this level of warming “would create catastrophe, wiping out agriculture in many areas and rendering swathes of the globe uninhabitable, as well as raising sea levels and causing mass migration, according to scientists”.

It’s a shocking thing to read from the director of a relatively conservative organization. It certainly suggests that the policy-makers of the world have their priorities badly misaligned with the welfare of their own citizens and of humanity as a whole.

For years now, the IEA has been calling for global carbon pricing.

Oil sands similes

  • Exploiting the oil sands is like drinking seawater, when you are already dangerously dehydrated.
  • It’s like starting up a smoky old kerosene lantern aboard a space station that is rapidly running out of air.
  • It’s like giving more whiskey to the already-drunk guide who is paddling our canoe over Niagara Falls.

And yet, huge expansion plans are being implemented. The fact that is is profitable has led us to ignore the fact that it is incredibly reckless, as well as an act of violence directed against vulnerable people and future generations.

Climate change and the categorical imperative

In many situations – especially those that can be characterized as a ‘tragedy of the commons’ or ‘free rider’ problem – taking the ethics of the situation seriously often involves ignoring the game theoretical aspects and applying a maxim of moral reasoning like the categorical imperative. If each actor behaves in such a way that their behaviour would be a good model for everyone to follow, then the problem of collective action goes away.

In terms of climate change, this sort of behaviour is important in areas like determining the appropriate policy for fossil fuel extraction. Every individual company and country has more to gain (at least in the short term) from digging up and selling fossil fuels then from restraining themselves. And yet every major fossil fuel producer will need to show restraint if we are to address the problem successfully. Not even Russia, Canada, and Saudi Arabia will benefit if we allow abrupt or runaway climate change to occur. The outcome is best for everyone when individuals ignore the reality that their actions alone will not determine the outcome of collective action, or when they are forced to behave as though they are ignoring that fact.

For those who don’t want the planet to be subjected to the risk of catastrophic climate change (say, warming of over 4˚C, which is where we’re heading now) the practical question is how to get individuals, companies, and states to behave as though they are taking the categorical imperative seriously.

Alternatively, perhaps we should abandon the idea that people will ever voluntarily restrain their pollution for the sake of others. In that case, we need a legal and institutional structure that makes behaving in an antisocial way personally costly (carbon taxes, restrictions on particularly harmful activities, etc).

Climate: the astronaut letter

This is an interesting anomaly:

Some prominent voices at NASA are fed up with the agency’s activist stance toward climate change.

The following letter asking the agency to move away from climate models and to limit its stance to what can be empirically proven, was sent by 49 former NASA scientists and astronauts.

The letter criticizes the Goddard Institute For Space Studies especially, where director Jim Hansen and climatologist Gavin Schmidt have been outspoken advocates for action.

“The unbridled advocacy of CO2 being the major cause of climate change is unbecoming of NASA’s history of making an objective assessment of all available scientific data prior to making decisions or public statements.”

“We believe the claims by NASA and GISS, that man-made carbon dioxide is having a catastrophic impact on global climate change are not substantiated.”

“We request that NASA refrain from including unproven and unsupported remarks in its future releases and websites on this subject.”

It’s true there is a lot of uncertainty surrounding abrupt and runaway climate change scenarios. That’s true almost by definition, since they represent major deviations from the functioning of the climate as we know it and we have no ability to conduct experiments on a planetary scale. It also seems fair to say that the possibility of abrupt and runaway climate change scenarios cannot be entirely excluded, if the world continues to emit vast amounts of greenhouse gas pollution.

While they are clearly objecting to some of the worst-case scenarios raised by James Hansen and others, I don’t think the people who signed this letter are likely to be of the view that climate change isn’t a problem at all. Unfortunately, it’s certain that this letter will circulate for years as a tool used by climate change delayers to argue that we should do nothing about the problem of accumulating CO2.

Other thoughts?